PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142946.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 866aa    MW: 95690 Da    PI: 5.6974
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.61.6e-25537618252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLg...............................vclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek+++l++l+++Fs+++kdAAk+Lg                               vc+T+LKriCRq+GI+RWP+Rki+++
  XP_009142946.1 537 EKNVTLSVLQQHFSGSLKDAAKSLGgevftlsqalmhfylpdkvsngldfgsnlvaVCPTTLKRICRQHGIMRWPSRKINKV 618
                     89******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020426.7E-25539618IPR003035RWP-RK domain
PROSITE profilePS5151913.174547638IPR003035RWP-RK domain
SuperFamilySSF542775.89E-22760851No hitNo description
Gene3DG3DSA:3.10.20.2401.4E-23764845No hitNo description
SMARTSM006662.5E-23766848IPR000270PB1 domain
PROSITE profilePS5174520.899766848IPR000270PB1 domain
CDDcd064071.12E-36767847No hitNo description
PfamPF005642.6E-17767847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MILLSIIDEM EHPFASRDKG FGYQDIPTEQ QMDVLSFGSA DMLNSSELMN FDSFSTWFNT  60
PSPTDLLFSQ YGLSTFGATT SSHPPEPRAG LTRSFHDLER SSVQQMSSQF HCSLDINELS  120
GKRRRVVNQT IPRSLSHSLD EKMLKALSLF IESSSGLGEG ILAQIWTPIK AGDQFILSTC  180
DQAYLLDPRL SNYREVSRKF TFASKPNQCS SSPGLPGRVF ISGVREWTSN VRYYKRDEYL  240
RMKHAVDNEV RGSIAIPILE EASGTSCCAV MELVTSKEKH DFDVEMESVC RALQAVNLRT  300
SEIPRPQYLS SNQREALAEI KDVLRAVCHA HKLPLALAWL PCSNGPNSLV LCVEETACYV  360
NDMEMEGFVQ ACLEHCLREK EGIVGKAFVS NQPSFASDVK VYDIGEYPLV HHARKYGLNA  420
AVAIKLRSTY TGEDDYILEL FLPISMKGSL EQQLLLDSLS GTLQRICRTL RTVSDVGATK  480
RSGEISTCSR NLQTIVLDCE LNANSSDKDN SSTGSQATFE QDMSKARTPE KKKSTTEKNV  540
TLSVLQQHFS GSLKDAAKSL GGEVFTLSQA LMHFYLPDKV SNGLDFGSNL VAVCPTTLKR  600
ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLR FDSARGEFVA AGPTPKGPSS  660
NGNNACEDTS FELLKAKSVD NAVKLEDDII TNDSFMDASG QQWDWMAEQS GFNGKLSSPV  720
TDGMETTIRS MSDSSNSSGA VVLGSSSTSM DDRNQTRTQG ESGSTTLTVK ATYREDTIRF  780
KFESSAGCSQ LYKEVSKRFK LQEGSFQLKY LDDEEEWVLM VTDADLQECL EILYGMGKHT  840
VKFLVRDLPA PIGSSGGSNG YLGTCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1626667e-71AM162666.1 Brassica napus rti-1 gene for rapeseed putative trypsin inhibitor 1, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142946.10.0PREDICTED: protein NLP8-like isoform X1
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLM4CKN20.0M4CKN2_BRARP; Uncharacterized protein
STRINGBra004767.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein